Basic Information
Locus ID:
nbisL1-mrna-12042
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8762298 | 8767339 | - | nbisL1-mrna-12042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 85,290.14 Da | 49.78 | 62.30 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 378 | 507 | 1.05083E-62 | - |
| CDD | cd00201 | WW | 22 | 52 | 6.20303E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 183 | 353 | 8.6E-50 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 390 | 498 | 1.2E-33 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 53 | 3.94E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 231 | 514 | 5.43E-76 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 60 | 1.2E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 369 | 540 | 2.4E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 368 | 3.8E-88 | IPR027417 |
| SMART | SM00456 | ww_5 | 20 | 53 | 5.6E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 418 | 498 | 1.5E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 178 | 381 | 1.5E-64 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 159 | 187 | 10.313123 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.1126 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 190 | 364 | 31.169479 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 537 | 25.810627 | IPR001650 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 310 | 318 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 658 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.6 | - | 0 |
| RefSeq | XP_024444827.1 | LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 14-like [Populus trichocarpa] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KLV4 | DEAD-box ATP-dependent RNA helicase 46 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology