halophFGD

Basic Information

Locus ID: nbisL1-mrna-12034

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr05	16884780	16896185	-	nbisL1-mrna-12034

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.57	77,557.12 Da	42.31	88.11	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01603	Protein phosphatase 2A regulatory B subunit (B56 family)	239	650	6.1E-184	IPR002554
Pfam	PF00628	PHD-finger	89	136	2.6E-8	IPR019787
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	84	137	2.66E-14	IPR011011
SUPERFAMILY	SSF48371	ARM repeat	251	645	5.12E-154	IPR016024
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	81	148	1.7E-16	IPR013083
Gene3D	G3DSA:1.25.10.10	-	246	649	9.0E-190	IPR011989
Gene3D	G3DSA:2.30.30.490	-	14	80	1.5E-5	IPR043151
SMART	SM00249	PHD_3	88	135	4.0E-6	IPR001965
ProSiteProfiles	PS51038	BAH domain profile.	1	84	10.003733	IPR001025

Gene Ontology

Biological Process:

GO:0007165 (signal transduction)

Molecular Function:

GO:0003682 (chromatin binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K11584 (serine/threonine-protein phosphatase 2A regulatory subunit B')

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04113 (Meiosis - yeast) map04113 (Meiosis - yeast) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G21650.1	Protein phosphatase 2A regulatory B subunit family protein. Encodes protein phosphatase 2A (PP2A) B'zeta subunit. Targeted to mitochondria.
RefSeq	XP_021630305.1	-
Swiss-Prot	Q9LVE2	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana OX=3702 GN=B'ZETA PE=2 SV=2
TrEMBL	A0A803QJ69	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	17	jg17726, jg19882, jg21077, jg23819, jg28897, jg28898, jg4517 ... jg28899, jg30438, jg32647, jg34368, jg34556, jg40433, jg5552, jg6983, jg7846, jg9761
Aizoaceae	Mesembryanthemum crystallinum	3	gene_18044, gene_20165, gene_25140
Amaranthaceae	Atriplex hortensis	3	Ah013826, Ah030671, Ah031913
Amaranthaceae	Beta vulgaris	3	BVRB_2g043620, BVRB_6g151630, BVRB_6g151640
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg27175, Sbi_jg30295, Sbi_jg33370, Sbi_jg42739 ... Sbi_jg42741, Sbi_jg43712, Sbi_jg45364, Sbi_jg45366
Amaranthaceae	Salicornia europaea	4	Seu_jg11227, Seu_jg11228, Seu_jg18196, Seu_jg8057
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002570, GOSA_00002571, GOSA_00005728, GOSA_00025505
Amaranthaceae	Suaeda glauca	9	Sgl35105, Sgl35106, Sgl40484, Sgl40485, Sgl65785, Sgl65800 ... Sgl70140, Sgl71282, Sgl74875
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000000375, gene:ENSEOMG00000003003 ... gene:ENSEOMG00000006179, gene:ENSEOMG00000012204, gene:ENSEOMG00000012482, gene:ENSEOMG00000013786, gene:ENSEOMG00000021119, gene:ENSEOMG00000026858, gene:ENSEOMG00000027089, gene:ENSEOMG00000036477, gene:ENSEOMG00000039446, gene:ENSEOMG00000049155
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0001750, CQ.Regalona.r1.2BG0002790 ... CQ.Regalona.r1.6AG0003620, CQ.Regalona.r1.6AG0003630, CQ.Regalona.r1.6BG0003630, CQ.Regalona.r1.7AG0018370, CQ.Regalona.r1.7BG0020820
Anacardiaceae	Pistacia vera	7	pistato.v30023840, pistato.v30170530, pistato.v30223550 ... pistato.v30253020, pistato.v30255970, pistato.v30273560, pistato.v30274490
Apiaceae	Apium graveolens	15	Ag10G01551, Ag10G01979, Ag11G03282, Ag11G04495, Ag1G00967 ... Ag2G00153, Ag2G00736, Ag2G02968, Ag3G00006, Ag3G00007, Ag3G02659, Ag6G02479, Ag8G00178, Ag8G02256, Ag9G00428
Arecaceae	Cocos nucifera	10	COCNU_02G000240, COCNU_06G000670, COCNU_08G003230 ... COCNU_08G004560, COCNU_08G009500, COCNU_09G004670, COCNU_09G005600, COCNU_11G000850, COCNU_11G002080, COCNU_14G000960
Arecaceae	Phoenix dactylifera	11	gene-LOC103704385, gene-LOC103705190, gene-LOC103711549 ... gene-LOC103712535, gene-LOC103714472, gene-LOC103718932, gene-LOC103721018, gene-LOC103722712, gene-LOC103723319, gene-LOC103723988, gene-LOC120106156
Asparagaceae	Asparagus officinalis	8	AsparagusV1_02.963.V1.1, AsparagusV1_03.1995.V1.1 ... AsparagusV1_04.574.V1.1, AsparagusV1_05.3178.V1.1, AsparagusV1_07.2438.V1.1, AsparagusV1_07.2869.V1.1, AsparagusV1_08.643.V1.1, AsparagusV1_10.1739.V1.1
Asteraceae	Flaveria trinervia	15	Ftri11G17165, Ftri12G26145, Ftri13G15131, Ftri14G22403 ... Ftri14G28515, Ftri16G06479, Ftri18G29762, Ftri2G28662, Ftri3G15475, Ftri3G31030, Ftri4G14548, Ftri6G18330, Ftri8G21134, Ftri8G28671, Ftri9G31348
Brassicaceae	Arabidopsis thaliana	9	AT1G13460.1, AT3G09880.1, AT3G21650.1, AT3G26020.4 ... AT3G26030.1, AT3G54930.1, AT4G15415.2, AT5G03470.1, AT5G25510.1
Brassicaceae	Eutrema salsugineum	9	Thhalv10004020m.g.v1.0, Thhalv10004060m.g.v1.0 ... Thhalv10004128m.g.v1.0, Thhalv10007450m.g.v1.0, Thhalv10010320m.g.v1.0, Thhalv10013349m.g.v1.0, Thhalv10020525m.g.v1.0, Thhalv10020593m.g.v1.0, Thhalv10024939m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g11930.v2.2, Sp2g15230.v2.2, Sp2g15240.v2.2 ... Sp2g22020.v2.2, Sp3g08230.v2.2, Sp3g19660.v2.2, Sp5g07490.v2.2, Sp6g39260.v2.2, Sp7g13590.v2.2
Brassicaceae	Brassica nigra	18	BniB01g041520.2N, BniB01g055010.2N, BniB02g066590.2N ... BniB02g074030.2N, BniB02g078030.2N, BniB03g023520.2N, BniB03g049980.2N, BniB03g069310.2N, BniB04g003970.2N, BniB04g008100.2N, BniB04g008110.2N, BniB04g013580.2N, BniB05g020830.2N, BniB05g030540.2N, BniB06g038270.2N, BniB06g057130.2N, BniB07g032050.2N, BniB08g069300.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G1948, Ceq02G2365, Ceq04G2265, Ceq07G1289, Ceq07G1290 ... Ceq07G1764, Ceq08G1381
Casuarinaceae	Casuarina glauca	7	Cgl02G2021, Cgl02G2448, Cgl04G2463, Cgl06G0729, Cgl07G1365 ... Cgl07G1910, Cgl08G1434
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno01g01970, gene.Cymno06g12250, gene.Cymno07g04410 ... gene.Cymno07g10640, gene.Cymno08g01680, gene.Cymno12g00340
Dunaliellaceae	Dunaliella salina	1	Dusal.0120s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate02g14220, gene.Thate02g32960, gene.Thate02g41570 ... gene.Thate04g02530, gene.Thate04g25440, gene.Thate05g15470, gene.Thate09g13480
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-1740, nbisL1-mrna-6474, nbisL1-mrna-8589 ... nbisL1-mrna-9850
Nitrariaceae	Nitraria sibirica	9	evm.TU.LG01.1528, evm.TU.LG02.1125, evm.TU.LG03.700 ... evm.TU.LG03.701, evm.TU.LG04.2110, evm.TU.LG05.203, evm.TU.LG07.1027, evm.TU.LG07.1387, evm.TU.LG08.347
Plantaginaceae	Plantago ovata	10	Pov_00001247, Pov_00005026, Pov_00007327, Pov_00013690 ... Pov_00022260, Pov_00027807, Pov_00028233, Pov_00039311, Pov_00040292, Pov_00040419
Plumbaginaceae	Limonium bicolor	11	Lb0G37370, Lb0G37873, Lb1G00489, Lb1G02858, Lb2G09885 ... Lb2G09892, Lb2G12574, Lb6G32372, Lb6G32373, Lb6G32377, Lb6G32378
Poaceae	Echinochloa crus-galli	30	AH01.1037, AH01.554, AH02.2773, AH02.439, AH03.2785, CH01.22 ... AH03.822, AH05.1142, AH05.1459, AH08.195, AH09.1360, BH01.1176, BH01.178, BH02.2857, BH02.456, BH03.2935, BH03.939, BH05.1349, BH05.1629, BH08.166, BH09.1541, CH01.1229, CH02.3683, CH02.505, CH03.1070, CH03.3136, CH05.1343, CH05.1834, CH08.49, CH09.1660
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_1AG0011970, gene-QOZ80_1AG0028820 ... gene-QOZ80_1BG0060560, gene-QOZ80_1BG0079050, gene-QOZ80_3AG0208650, gene-QOZ80_3AG0221520, gene-QOZ80_3BG0253730, gene-QOZ80_3BG0266660, gene-QOZ80_4AG0313010, gene-QOZ80_4BG0344170, gene-QOZ80_5AG0363880, gene-QOZ80_5AG0402860, gene-QOZ80_5BG0411980, gene-QOZ80_5BG0451330, gene-QOZ80_6AG0527710, gene-QOZ80_6BG0481730, gene-QOZ80_7AG0562900, gene-QOZ80_8AG0615920, gene-QOZ80_8BG0643400
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0027220.1, HORVU.MOREX.r3.1HG0085140.1 ... HORVU.MOREX.r3.2HG0176680.1, HORVU.MOREX.r3.3HG0239920.1, HORVU.MOREX.r3.4HG0334450.1, HORVU.MOREX.r3.5HG0501310.1, HORVU.MOREX.r3.5HG0532920.1, HORVU.MOREX.r3.7HG0703720.1
Poaceae	Lolium multiflorum	8	gene-QYE76_007296, gene-QYE76_009742, gene-QYE76_015667 ... gene-QYE76_033505, gene-QYE76_044770, gene-QYE76_050443, gene-QYE76_060049, gene-QYE76_063084
Poaceae	Oryza coarctata	19	Oco01G003270, Oco02G003290, Oco04G006250, Oco05G020250 ... Oco05G028720, Oco06G021040, Oco06G029750, Oco07G008950, Oco08G008890, Oco09G003510, Oco09G016300, Oco10G003510, Oco10G016110, Oco13G004960, Oco14G005780, Oco15G001030, Oco16G001190, Oco17G010840, Oco18G010770
Poaceae	Oryza sativa	2	LOC_Os01g08310.1, LOC_Os09g03480.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G013700, gene-BS78_01G124600 ... gene-BS78_02G120900, gene-BS78_02G260200, gene-BS78_03G042100, gene-BS78_06G139900, gene-BS78_07G026000, gene-BS78_07G026900, gene-BS78_09G070200, gene-BS78_09G229600
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0104680, Pt_Chr0200292, Pt_Chr0206864, Pt_Chr0307225 ... Pt_Chr0402593, Pt_Chr0501632, Pt_Chr0501645, Pt_Chr0503604, Pt_Ctg00233
Poaceae	Sporobolus alterniflorus	34	Chr01G000620, Chr01G008250, Chr01G011550, Chr01G015350 ... Chr02G012510, Chr02G020100, Chr03G005570, Chr03G013630, Chr04G025880, Chr04G032300, Chr05G011000, Chr05G021120, Chr07G024750, Chr07G031350, Chr08G006020, Chr08G013790, Chr10G014540, Chr11G007730, Chr12G021480, Chr12G025120, Chr12G029020, Chr12G032080, Chr16G000440, Chr17G000440, Chr18G006270, Chr18G014520, Chr20G013010, Chr22G001800, Chr22G014040, Chr23G010280, Chr25G009390, Chr26G009460, Chr28G006480, Chr29G012330
Poaceae	Thinopyrum elongatum	8	Tel1E01G218600, Tel1E01G625400, Tel2E01G595700 ... Tel3E01G209300, Tel4E01G051100, Tel5E01G533400, Tel5E01G827700, Tel7E01G539700
Poaceae	Triticum dicoccoides	16	gene_TRIDC1AG013640, gene_TRIDC1AG056290 ... gene_TRIDC1BG020750, gene_TRIDC1BG064760, gene_TRIDC2AG049760, gene_TRIDC2BG052660, gene_TRIDC3AG015140, gene_TRIDC3BG019710, gene_TRIDC4AG044460, gene_TRIDC4AG051480, gene_TRIDC4BG004510, gene_TRIDC5AG049470, gene_TRIDC5BG053270, gene_TRIDC5BG079140, gene_TRIDC7AG043770, gene_TRIDC7BG035040
Poaceae	Triticum aestivum	23	TraesCS1A02G118300.2, TraesCS1A02G382900.2 ... TraesCS1B02G138000.1, TraesCS1B02G408600.1, TraesCS1D02G119400.1, TraesCS1D02G390600.1, TraesCS2A02G320700.2, TraesCS2B02G362000.2, TraesCS2D02G341400.3, TraesCS3A02G121400.1, TraesCS3B02G140800.1, TraesCS3D02G123500.1, TraesCS4A02G341600.1, TraesCS4B02G026300.1, TraesCS4D02G023700.1, TraesCS5A02G336800.1, TraesCS5B02G335800.1, TraesCS5B02G533000.1, TraesCS5D02G341500.1, TraesCS5D02G531300.1, TraesCS7A02G313600.1, TraesCS7B02G214300.2, TraesCS7D02G310200.1
Poaceae	Zea mays	15	Zm00001eb051830_P001, Zm00001eb064210_P001 ... Zm00001eb079260_P001, Zm00001eb097290_P001, Zm00001eb103950_P001, Zm00001eb122420_P001, Zm00001eb153050_P001, Zm00001eb173420_P001, Zm00001eb217320_P001, Zm00001eb261300_P001, Zm00001eb283010_P002, Zm00001eb295170_P001, Zm00001eb304930_P002, Zm00001eb343160_P001, Zm00001eb425160_P002
Poaceae	Zoysia japonica	15	nbis-gene-12585, nbis-gene-13197, nbis-gene-14656 ... nbis-gene-15627, nbis-gene-15755, nbis-gene-16729, nbis-gene-23571, nbis-gene-24907, nbis-gene-36918, nbis-gene-39202, nbis-gene-41467, nbis-gene-42491, nbis-gene-53247, nbis-gene-6803, nbis-gene-7367
Poaceae	Zoysia macrostachya	16	Zma_g10065, Zma_g19938, Zma_g21490, Zma_g22402, Zma_g23546 ... Zma_g2386, Zma_g26531, Zma_g28762, Zma_g29976, Zma_g3063, Zma_g32153, Zma_g5014, Zma_g75, Zma_g754, Zma_g7723, Zma_g8440
Portulacaceae	Portulaca oleracea	6	evm.TU.LG13.103, evm.TU.LG13.104, evm.TU.LG16.1119 ... evm.TU.LG18.368, evm.TU.LG20.1425, evm.TU.LG26.668
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g15920, gene.Posoc02g08380, gene.Posoc03g03890 ... gene.Posoc05g01260, gene.Posoc05g07560, gene.Posoc08g15450, gene.Posoc09g11710
Rhizophoraceae	Bruguiera sexangula	13	evm.TU.60444.22, evm.TU.Scaffold_10_RagTag.378 ... evm.TU.Scaffold_10_RagTag.808, evm.TU.Scaffold_17_RagTag.4, evm.TU.Scaffold_1_RagTag.1514, evm.TU.Scaffold_2_RagTag.65, evm.TU.Scaffold_2_RagTag.907, evm.TU.Scaffold_2_RagTag.909, evm.TU.Scaffold_3_RagTag.1985, evm.TU.Scaffold_4_RagTag.1972, evm.TU.Scaffold_5_RagTag.1548, evm.TU.Scaffold_6_RagTag.78, evm.TU.Scaffold_9_RagTag.1369
Rhizophoraceae	Carallia pectinifolia	14	nbisL1-mrna-12034, nbisL1-mrna-13159, nbisL1-mrna-13676 ... nbisL1-mrna-14893, nbisL1-mrna-20397, nbisL1-mrna-20504, nbisL1-mrna-23190, nbisL1-mrna-2453, nbisL1-mrna-2524, nbisL1-mrna-25567, nbisL1-mrna-2607, nbisL1-mrna-4294, nbisL1-mrna-5143, nbisL1-mrna-6082
Rhizophoraceae	Ceriops tagal	11	nbisL1-mrna-10981, nbisL1-mrna-11899, nbisL1-mrna-1207 ... nbisL1-mrna-15019, nbisL1-mrna-15950, nbisL1-mrna-16533, nbisL1-mrna-3599, nbisL1-mrna-3748, nbisL1-mrna-597, nbisL1-mrna-6799, nbisL1-mrna-862
Rhizophoraceae	Ceriops zippeliana	11	nbisL1-mrna-10018, nbisL1-mrna-10955, nbisL1-mrna-14681 ... nbisL1-mrna-16783, nbisL1-mrna-21368, nbisL1-mrna-3137, nbisL1-mrna-3947, nbisL1-mrna-4750, nbisL1-mrna-71, nbisL1-mrna-9056, nbisL1-mrna-9327
Rhizophoraceae	Kandelia candel	11	add.evm.TU.utg000009l.478, evm.TU.utg000003l.856 ... evm.TU.utg000004l.133, evm.TU.utg000008l.1141, evm.TU.utg000009l.1199, evm.TU.utg000009l.901, evm.TU.utg000011l.56, evm.TU.utg000013l.105, evm.TU.utg000016l.514, evm.TU.utg000019l.27, evm.TU.utg000033l.255
Rhizophoraceae	Kandelia obovata	10	Maker00000635, Maker00001887, Maker00003976, Maker00005768 ... Maker00006217, Maker00006517, Maker00006890, Maker00009483, Maker00014754, Maker00016768
Rhizophoraceae	Rhizophora apiculata	12	nbisL1-mrna-10420, nbisL1-mrna-11921, nbisL1-mrna-11996 ... nbisL1-mrna-1205, nbisL1-mrna-12612, nbisL1-mrna-14211, nbisL1-mrna-16518, nbisL1-mrna-22449, nbisL1-mrna-22450, nbisL1-mrna-3812, nbisL1-mrna-7015, nbisL1-mrna-7688
Rhizophoraceae	Rhizophora mangle	10	nbisL1-mrna-14754, nbisL1-mrna-15491, nbisL1-mrna-15945 ... nbisL1-mrna-17511, nbisL1-mrna-21180, nbisL1-mrna-25421, nbisL1-mrna-381, nbisL1-mrna-4699, nbisL1-mrna-5827, nbisL1-mrna-7908
Salicaceae	Populus euphratica	12	populus_peu04833, populus_peu05127, populus_peu07654 ... populus_peu08673, populus_peu11641, populus_peu12824, populus_peu19312, populus_peu21699, populus_peu21700, populus_peu25605, populus_peu36682, populus_peu37652
Solanaceae	Lycium barbarum	11	gene-LOC132607130, gene-LOC132617104, gene-LOC132619334 ... gene-LOC132621389, gene-LOC132625158, gene-LOC132629984, gene-LOC132636767, gene-LOC132640076, gene-LOC132641227, gene-LOC132643807, gene-LOC132644752
Solanaceae	Solanum chilense	10	SOLCI000008800, SOLCI000016400, SOLCI001287400 ... SOLCI003866900, SOLCI004252600, SOLCI004503900, SOLCI005095300, SOLCI005191700, SOLCI006785800, SOLCI007345200
Solanaceae	Solanum pennellii	10	gene-LOC107002405, gene-LOC107005174, gene-LOC107007183 ... gene-LOC107011078, gene-LOC107011289, gene-LOC107020583, gene-LOC107020814, gene-LOC107023411, gene-LOC107025341, gene-LOC107029238
Tamaricaceae	Reaumuria soongarica	7	STRG.13875_chr05_-, STRG.19638_chr07_+, STRG.27300_chr04_- ... STRG.32877_chr09_+, STRG.5127_chr03_+, STRG.5128_chr03_+, gene_6730
Tamaricaceae	Tamarix chinensis	8	TC00000066, TC01G1649, TC01G3520, TC02G0432, TC02G1941 ... TC03G0532, TC04G0419, TC11G0395
Zosteraceae	Zostera marina	8	Zosma01g05980.v3.1, Zosma04g02370.v3.1, Zosma04g07120.v3.1 ... Zosma04g09270.v3.1, Zosma05g07300.v3.1, Zosma05g08040.v3.1, Zosma05g08050.v3.1, Zosma06g23640.v3.1