halophFGD

Basic Information

Locus ID: nbisL1-mrna-12028

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000298F_pilon	2585865	2588292	-	nbisL1-mrna-12028

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.75	38,405.69 Da	33.10	74.27	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	44	344	3.01718E-97	-
Pfam	PF00400	WD domain, G-beta repeat	134	171	7.2E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	92	129	5.9E-11	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	281	300	0.15	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	306	344	1.5E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	175	213	6.1E-10	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	44	77	7.9E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	218	256	6.7E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	39	344	5.5E-97	IPR036322
Gene3D	G3DSA:2.130.10.10	-	32	348	1.1E-131	IPR015943
SMART	SM00320	WD40_4	132	171	2.5E-11	IPR001680
SMART	SM00320	WD40_4	174	213	1.7E-12	IPR001680
SMART	SM00320	WD40_4	304	345	3.8E-5	IPR001680
SMART	SM00320	WD40_4	90	129	4.5E-12	IPR001680
SMART	SM00320	WD40_4	41	80	1.1E-7	IPR001680
SMART	SM00320	WD40_4	216	256	8.8E-6	IPR001680
SMART	SM00320	WD40_4	259	301	0.0032	IPR001680
PIRSF	PIRSF002394	GNBP_B	2	347	1.1E-79	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	284	310	10.207686	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	139	176	14.450121	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	181	213	12.130133	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	48	89	12.714052	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	224	265	13.783434	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	224	261	10.390142	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	48	82	10.284687	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	181	222	15.72169	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	97	138	18.161219	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	97	134	13.84376	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	139	180	18.762747	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	116	130	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	288	302	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	158	172	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	158	172	1.4E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	116	130	1.4E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	288	302	1.4E-9	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	34	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	38	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_021630600.1	COMPASS-like H3K4 histone methylase component WDR5A [Manihot esculenta]
Swiss-Prot	Q9M2Z2	COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana OX=3702 GN=WDR5A PE=1 SV=1
TrEMBL	A0A2P2PIC5	Uncharacterized protein MANES_12G119800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1