Basic Information
Locus ID:
nbisL1-mrna-12013
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 22143521 | 22145275 | + | nbisL1-mrna-12013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 61,906.01 Da | 29.06 | 90.39 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 60 | 3.9E-5 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 321 | 358 | 4.2 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 88 | 144 | 1.3E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 429 | 9.07E-47 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 322 | 445 | 1.0E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 320 | 7.0E-69 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 133 | 154 | 81.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 86 | 108 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 384 | 408 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 206 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 132 | 0.052 | IPR003591 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 469 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_039029816.1 | receptor-like kinase TMK4 [Hibiscus syriacus] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XPP8 | Protein kinase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111505pilonHSYRG00046 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology