Basic Information
Locus ID:
nbisL1-mrna-12010
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8985442 | 8987813 | + | nbisL1-mrna-12010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 56,031.26 Da | 40.46 | 105.33 | 0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 37 | 314 | 1.2E-34 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 345 | 476 | 1.0E-12 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 9 | 484 | 2.09E-76 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 19 | 488 | 3.1E-91 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 26 | 480 | 40.748737 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 356 | 371 | - | IPR005829 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 508 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020539794.1 | organic cation/carnitine transporter 7 isoform X2 [Jatropha curcas] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MQS3 | Organic cation/carnitine transporter 7-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology