Basic Information
Locus ID:
nbisL1-mrna-11961
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 2106790 | 2109469 | - | nbisL1-mrna-11961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 17,714.98 Da | 54.67 | 86.10 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1 | 90 | 2.1E-27 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 93 | 7.01E-30 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 87 | 4.5E-45 | - |
| SMART | SM00220 | serkin_6 | 1 | 147 | 0.0052 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 154 | 23.227121 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 12 | 24 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23080.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_004290955.1 | PREDICTED: casein kinase II subunit alpha-like [Fragaria vesca subsp. vesca] | 0 |
| P28523 | Casein kinase II subunit alpha OS=Zea mays OX=4577 GN=ACK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A445AQY2 | Protein kinase domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g053013 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for nbisL1-mrna-11961.