Basic Information
Locus ID:
nbisL1-mrna-11949
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
G-type lectin S-receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 16205150 | 16209946 | + | nbisL1-mrna-11949 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 89,351.13 Da | 42.15 | 75.89 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 371 | 457 | 7.68832E-12 | - |
| CDD | cd00028 | B_lectin | 54 | 173 | 1.29106E-19 | IPR001480 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 470 | 526 | 3.0E-7 | IPR025287 |
| Pfam | PF00954 | S-locus glycoprotein domain | 276 | 350 | 9.7E-18 | IPR000858 |
| Pfam | PF08276 | PAN-like domain | 375 | 442 | 2.3E-9 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 92 | 188 | 1.3E-26 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 92 | 197 | 6.02E-21 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 710 | 785 | 1.71E-14 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 692 | 786 | 7.8E-24 | - |
| Gene3D | G3DSA:2.90.10.10 | - | 33 | 171 | 4.7E-12 | IPR036426 |
| SMART | SM00473 | ntp_6 | 375 | 456 | 2.0E-7 | IPR003609 |
| SMART | SM00108 | blect_4 | 47 | 173 | 9.0E-16 | IPR001480 |
| PIRSF | PIRSF000641 | SRK | 8 | 483 | 1.0E-83 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 485 | 629 | 89.0 | IPR024171 |
| PIRSF | PIRSF000641 | SRK | 577 | 785 | 1.3E-31 | IPR024171 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 317 | 353 | 8.913557 | IPR000742 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 371 | 457 | 8.458675 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 725 | 794 | 10.718533 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 40 | 166 | 12.632485 | IPR001480 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03230.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_021829959.1 | - | 0 |
| Q9ZR08 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana OX=3702 GN=At4g03230 PE=3 SV=3 | 0 | |
| TrEMBL | A0A6P5TSW0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah000566, Ah000567 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_5g117620, BVRB_5g117630, BVRB_5g117640, BVRB_5g117650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30579, Sbi_jg58673 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28540 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014903, GOSA_00014906, GOSA_00014908, GOSA_00014913 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl55195, Sgl55196, Sgl55199, Sgl60445, Sgl60447 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008135, gene:ENSEOMG00000021474 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023300, CQ.Regalona.r1.5BG0024780 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30019010, pistato.v30019020 |
| Apiaceae | Apium graveolens | 3 | Ag11G03332, Ag11G03333, Ag11G03334 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G02911, Ftri4G05414 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03230.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03270.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 11 | Ceq02G2493, Ceq02G2500, Ceq02G2604, Ceq04G1183, Ceq05G2137 ... |
| Casuarinaceae | Casuarina glauca | 10 | Cgl02G2587, Cgl02G2592, Cgl04G1341, Cgl07G0430, Cgl07G0432 ... |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG04.1983, evm.TU.LG04.1984, evm.TU.LG04.1985 ... |
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG01.2451, evm.TU.LG01.2452, evm.TU.LG01.2453 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1455, evm.TU.Scaffold_5_RagTag.1457 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11949, nbisL1-mrna-11951 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20422 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11031 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.837 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10263, nbisL1-mrna-10365 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15412, nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Salicaceae | Populus euphratica | 3 | populus_peu16955, populus_peu18614, populus_peu18615 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132619497, gene-LOC132623522 |
| Solanaceae | Solanum chilense | 2 | SOLCI003380300, SOLCI004537700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010949, gene-LOC107024358 |