halophFGD

Basic Information

Locus ID: nbisL1-mrna-11917

Species & Taxonomic ID: Ceriops zippeliana & 413951

Genome Assembly: GCA_037897445.1

Description: Histone-lysine n-methyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
000298F_pilon	1808282	1815924	-	nbisL1-mrna-11917

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.08	72,679.96 Da	50.98	58.36	-0.82

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10519	SET_EZH	496	612	8.09112E-76	-
Pfam	PF00856	SET domain	507	610	1.4E-10	IPR001214
Pfam	PF18264	CXC domain	434	465	3.9E-8	IPR041355
SUPERFAMILY	SSF82199	SET domain	376	616	2.88E-50	-
Gene3D	G3DSA:2.170.270.10	SET domain	396	613	6.3E-67	-
SMART	SM01114	CXC_2	430	467	2.8E-10	IPR033467
SMART	SM00317	set_7	496	617	3.6E-30	IPR001214
ProSiteProfiles	PS51576	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	13	647	206.715225	IPR025778
ProSiteProfiles	PS51633	CXC domain profile.	382	481	23.492191	IPR026489
ProSiteProfiles	PS50280	SET domain profile.	496	611	14.078079	IPR001214
MobiDBLite	mobidb-lite	consensus disorder prediction	75	135	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	627	647	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	59	232	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	190	204	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	157	172	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	621	647	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0031519 (PcG protein complex)

KEGG Pathway

KO Term:

K11430 ([histone H3]-lysine27 N-trimethyltransferase EZH2 [EC:2.1.1.356])

Pathway:

ko00310 (Lysine degradation) map00310 (Lysine degradation)

Reaction:

R03875 (Protein lysine + S-Adenosyl-L-methionine <=> Protein N6-methyl-L-lysine + S-Adenosyl-L-homocysteine) R03938 (S-Adenosyl-L-methionine + Histone-L-lysine <=> S-Adenosyl-L-homocysteine + Histone N6-methyl-L-lysine) R04866 (S-Adenosyl-L-methionine + Protein N6-methyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6-dimethyl-L-lysine) R04867 (S-Adenosyl-L-methionine + Protein N6,N6-dimethyl-L-lysine <=> S-Adenosyl-L-homocysteine + Protein N6,N6,N6-trimethyl-L-lysine)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23380.2	-
RefSeq	XP_012079259.1	histone-lysine N-methyltransferase CLF isoform X1 [Jatropha curcas]
Swiss-Prot	P93831	Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana OX=3702 GN=CLF PE=1 SV=2
TrEMBL	A0A067KAC2	[histone H3]-lysine(27) N-trimethyltransferase OS=Jatropha curcas OX=180498 GN=JCGZ_12419 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35113, jg40015
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15041, gene_19265
Amaranthaceae	Atriplex hortensis	4	Ah000105, Ah004342, Ah005404, Ah005405
Amaranthaceae	Beta vulgaris	2	BVRB_5g106820, BVRB_5g121850
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg24543, Sbi_jg31326, Sbi_jg57960, Sbi_jg8391
Amaranthaceae	Salicornia europaea	2	Seu_jg11656, Seu_jg25585
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004473, GOSA_00010875
Amaranthaceae	Suaeda glauca	4	Sgl51274, Sgl54528, Sgl56576, Sgl59869
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000005614, gene:ENSEOMG00000007252 ... gene:ENSEOMG00000021857, gene:ENSEOMG00000021878, gene:ENSEOMG00000023549, gene:ENSEOMG00000024022, gene:ENSEOMG00000024435
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0002010, CQ.Regalona.r1.5AG0027020 ... CQ.Regalona.r1.5BG0002130, CQ.Regalona.r1.5BG0028620
Anacardiaceae	Pistacia vera	2	pistato.v30008100, pistato.v30206130
Apiaceae	Apium graveolens	4	Ag4G01104, Ag5G00291, Ag5G02886, Ag9G02327
Arecaceae	Cocos nucifera	3	COCNU_08G005060, COCNU_11G000180, COCNU_16G004410
Arecaceae	Phoenix dactylifera	3	gene-LOC103696622, gene-LOC103713764, gene-LOC103724029
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1673.V1.1, AsparagusV1_08.1457.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G00317, Ftri15G03347, Ftri17G16197, Ftri18G17065
Brassicaceae	Arabidopsis thaliana	2	AT2G23380.1, AT4G02020.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000037m.g.v1.0, Thhalv10028423m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g02390.v2.2, Sp6g01900.v2.2
Brassicaceae	Brassica nigra	2	BniB01g020410.2N, BniB08g044480.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1333, Ceq06G1050
Casuarinaceae	Casuarina glauca	2	Cgl05G1338, Cgl06G1092
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g06510, gene.Cymno18g03860
Dunaliellaceae	Dunaliella salina	1	Dusal.0011s00040.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09320, gene.Thate05g09090
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2109, evm.TU.LG04.450
Plantaginaceae	Plantago ovata	3	Pov_00024947, Pov_00029191, Pov_00029199
Plumbaginaceae	Limonium bicolor	3	Lb8G36103, Lb8G36104, Lb8G36105
Poaceae	Echinochloa crus-galli	6	AH01.3875, AH06.370, BH01.4213, BH06.488, CH01.4500 ... CH06.489
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0245610, gene-QOZ80_3AG0245620 ... gene-QOZ80_3BG0282500, gene-QOZ80_6AG0510020, gene-QOZ80_6BG0462170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0382250.1, HORVU.MOREX.r3.7HG0655900.1 ... HORVU.MOREX.r3.7HG0655960.1
Poaceae	Lolium multiflorum	3	gene-QYE76_028415, gene-QYE76_063025, gene-QYE76_068467
Poaceae	Oryza coarctata	3	Oco06G014810, Oco11G007280, Oco12G007370
Poaceae	Oryza sativa	2	LOC_Os03g19480.1, LOC_Os06g16390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G377500, gene-BS78_10G055000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102572, Pt_Chr0105706, Pt_Chr0402067, Pt_Chr0402103
Poaceae	Sporobolus alterniflorus	6	Chr01G032910, Chr04G009580, Chr11G022110, Chr12G006670 ... Chr14G002360, Chr21G001470
Poaceae	Thinopyrum elongatum	3	Tel4E01G329400, Tel7E01G260300, Tel7E01G260700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG017090, gene_TRIDC4BG031660 ... gene_TRIDC7AG014970, gene_TRIDC7AG015060, gene_TRIDC7BG004320
Poaceae	Triticum aestivum	9	TraesCS4A02G121300.4, TraesCS4B02G181400.3 ... TraesCS4D02G184600.3, TraesCS7A02G128300.1, TraesCS7A02G128600.1, TraesCS7B02G028200.2, TraesCS7B02G028500.2, TraesCS7D02G127100.2, TraesCS7D02G127400.1
Poaceae	Zea mays	3	Zm00001eb014730_P001, Zm00001eb271490_P005 ... Zm00001eb396070_P002
Poaceae	Zoysia japonica	2	nbis-gene-3518, nbis-gene-5096
Poaceae	Zoysia macrostachya	2	Zma_g29163, Zma_g3769
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1253, evm.TU.LG09.719, evm.TU.LG10.688 ... evm.TU.LG17.699
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g04650, gene.Posoc07g12580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_6_RagTag.1859, evm.TU.Scaffold_9_RagTag.749
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17281, nbisL1-mrna-21472
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20015, nbisL1-mrna-8423
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11917, nbisL1-mrna-18542
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.629, evm.TU.utg000011l.1134
Rhizophoraceae	Kandelia obovata	2	Maker00007791, Maker00009601
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15493, nbisL1-mrna-1612
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3234, nbisL1-mrna-5293
Salicaceae	Populus euphratica	4	populus_peu14405, populus_peu23376, populus_peu27351 ... populus_peu31334
Solanaceae	Lycium barbarum	3	gene-LOC132616927, gene-LOC132623421, gene-LOC132644930
Solanaceae	Solanum chilense	3	SOLCI000735100, SOLCI000869500, SOLCI001076900
Solanaceae	Solanum pennellii	3	gene-LOC107001506, gene-LOC107011481, gene-LOC107014997
Tamaricaceae	Reaumuria soongarica	2	gene_17331, gene_3847
Tamaricaceae	Tamarix chinensis	3	TC04G1756, TC07G1795, TC07G2777
Zosteraceae	Zostera marina	2	Zosma02g18570.v3.1, Zosma05g30470.v3.1