Basic Information
Locus ID:
nbisL1-mrna-11910
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
heme protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15308815 | 15311102 | + | nbisL1-mrna-11910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 34,054.39 Da | 40.61 | 80.03 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02167 | Cytochrome C1 family | 81 | 297 | 1.2E-97 | IPR002326 |
| SUPERFAMILY | SSF81496 | Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor | 265 | 309 | 7.19E-13 | IPR021157 |
| SUPERFAMILY | SSF46626 | Cytochrome c | 75 | 264 | 1.06E-72 | IPR036909 |
| Gene3D | G3DSA:1.10.760.10 | - | 70 | 265 | 7.8E-92 | IPR036909 |
| Gene3D | G3DSA:1.20.5.100 | - | 266 | 309 | 1.7E-16 | - |
| ProSiteProfiles | PS51007 | Cytochrome c family profile. | 93 | 200 | 7.314093 | IPR009056 |
| PRINTS | PR00603 | Cytochrome C1 signature | 144 | 164 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 177 | 201 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 79 | 98 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 99 | 118 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 215 | 226 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 226 | 245 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 265 | 280 | 6.4E-78 | IPR002326 |
| PRINTS | PR00603 | Cytochrome C1 signature | 246 | 265 | 6.4E-78 | IPR002326 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40810.1 | Cytochrome C1 family. | 0 |
| RefSeq | XP_021677705.1 | cytochrome c1-2, heme protein, mitochondrial-like [Hevea brasiliensis] | 0 |
| Q9FKS5 | Cytochrome c1 2, heme protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CYC1-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7H5 | Cytochrome c domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg17711, jg25396, jg27178, jg40446 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19548, gene_21375 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah001165, Ah010635 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116480 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg30484, Sbi_jg46453, Sbi_jg58767 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20769, Seu_jg28640 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005224, GOSA_00014990 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl55277, Sgl55974, Sgl60541, Sgl60543, Sgl61146 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000004851, gene:ENSEOMG00000021319 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0022290, CQ.Regalona.r1.5BG0023700 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30023980, pistato.v30115950, pistato.v30115980 ... |
| Apiaceae | Apium graveolens | 2 | Ag4G00719, Ag9G00421 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G009680, COCNU_08G009840, COCNU_08G011570 |
| Arecaceae | Phoenix dactylifera | 10 | gene-LOC103698836, gene-LOC103699919, gene-LOC103700669 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.157.V1.1, AsparagusV1_05.3210.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G27774, Ftri1G24212, Ftri1G25190, Ftri6G27416 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G27240.1, AT5G40810.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004628m.g.v1.0, Thhalv10027856m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g16370.v2.2, Sp7g01100.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g025670.2N, BniB02g067400.2N, BniB04g007420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1971 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2044 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g12390, gene.Cymno08g01000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0291s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2290, nbisL1-mrna-5534 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.433, evm.TU.LG05.183 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015457, Pov_00027793 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11929, Lb2G14520 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4443, AH08.2361, BH02.4482, BH08.2518, CH02.4529 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0045850, gene-QOZ80_1BG0095820 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030689 |
| Poaceae | Oryza coarctata | 4 | Oco01G029430, Oco02G030620, Oco09G005740, Oco09G005750 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g70960.1, LOC_Os05g23620.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G396300, gene-BS78_07G225200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403389 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G001510, Chr05G032930, Chr05G033040, Chr20G003180 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G725300, Tel7E01G480500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064740, gene_TRIDC3BG073120 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G458200.1, TraesCS3D02G451000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb039620_P001, Zm00001eb176210_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-17645, nbis-gene-28219, nbis-gene-42860 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11890, Zma_g23427, Zma_g24519 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2527, evm.TU.LG14.1667 |
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g06630, gene.Posoc03g22430, gene.Posoc04g09310 ... |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1215, evm.TU.Scaffold_6_RagTag.91 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14903 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6807, nbisL1-mrna-826 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-82 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000019l.12, evm.TU.utg000011l.65 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001603, Maker00007234 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11910, nbisL1-mrna-11987 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17498 |
| Salicaceae | Populus euphratica | 2 | populus_peu08441, populus_peu36909 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132598606, gene-LOC132603665, gene-LOC132622628 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI000007600, SOLCI004752500, SOLCI006740600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007360, gene-LOC107011068, gene-LOC107023559 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.13892_chr05_-, gene_2311 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3504, TC03G1333 |
| Zosteraceae | Zostera marina | 2 | Zosma01g34250.v3.1, Zosma05g01820.v3.1 |