Basic Information
Locus ID:
nbisL1-mrna-119
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 646762 | 649594 | - | nbisL1-mrna-119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 44,423.10 Da | 40.73 | 82.59 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 296 | 9.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 300 | 9.01E-26 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 63 | 388 | 1.2E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 0.091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 296 | 0.0052 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021621204.1 | autophagy-related protein 18a isoform X1 [Manihot esculenta] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VGV5 | Autophagy-related protein 18a-like OS=Manihot esculenta OX=3983 GN=MANES_08G119100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology