Basic Information
Locus ID:
nbisL1-mrna-11884
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
mitogen-activated protein kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15171897 | 15173631 | + | nbisL1-mrna-11884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 22,607.93 Da | 27.99 | 108.84 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 11 | 166 | 1.9E-28 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 198 | 5.13E-38 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 9 | 172 | 3.9E-34 | - |
| SMART | SM00220 | serkin_6 | 6 | 193 | 2.7E-16 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 6 | 207 | 21.417969 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 12 | 35 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 119 | 131 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40440.5 | - | 0 |
| RefSeq | XP_021610843.1 | mitogen-activated protein kinase kinase 3 [Manihot esculenta] | 0 |
| O80396 | Mitogen-activated protein kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MKK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J6GF56 | Mitogen-activated protein kinase kinase 3 OS=Cannabis sativa OX=3483 GN=F8388_021229 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25868 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12217 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008881 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g088910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18297, Sbi_jg36682 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4636 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017453 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23446, Sgl23564, Sgl28572, Sgl28747 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010489, gene:ENSEOMG00000028985 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0022020, CQ.Regalona.r1.4AG0023370 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022960 |
| Apiaceae | Apium graveolens | 1 | Ag7G01966 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010800 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703776 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.571.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G11805 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G40440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027723m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g01490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g026340.2N, BniB03g057860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1872 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1951 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g08150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0583s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.305 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041435 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05107, Lb5G28346, Lb5G28351 |
| Poaceae | Echinochloa crus-galli | 8 | AH07.3340, AH08.1663, AH08.1664, BH07.3165, BH08.1713 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0520570, gene-QOZ80_6BG0473050 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0457350.1, HORVU.MOREX.r3.5HG0537390.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001844 |
| Poaceae | Oryza coarctata | 1 | Oco12G009050 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g27890.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G418000, gene-BS78_02G161600 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0106911, Pt_Chr0207483, Pt_Chr0703880 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G002620, Chr11G016170, Chr31G003810 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G102700, Tel5E01G225500, Tel5E01G890300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG047480, gene_TRIDC5AG020820 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G122700.4, TraesCS5B02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb133330_P001, Zm00001eb217030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43796 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23044, Zma_g31871 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.499, evm.TU.LG09.1743 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g23590 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1918, evm.TU.Scaffold_6_RagTag.126 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14940 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17415, nbisL1-mrna-628 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-110, nbisL1-mrna-3087 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.90, evm.TU.utg000019l.66 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002039, Maker00006949 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11884, nbisL1-mrna-12037 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17472 |
| Salicaceae | Populus euphratica | 2 | populus_peu01076, populus_peu01083 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632449 |
| Solanaceae | Solanum chilense | 1 | SOLCI005915500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015234 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_935 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0957 |
| Zosteraceae | Zostera marina | 1 | Zosma01g31760.v3.1 |