Basic Information
Locus ID:
nbisL1-mrna-11884
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 20755365 | 20756651 | - | nbisL1-mrna-11884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 48,618.92 Da | 47.39 | 99.32 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 28 | 70 | 5.98906E-24 | - |
| Pfam | PF04564 | U-box domain | 24 | 95 | 7.1E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 208 | 406 | 3.66E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 100 | 8.24E-31 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 100 | 6.4E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 121 | 406 | 8.9E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 27 | 90 | 1.9E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 23 | 97 | 31.69591 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_038994657.1 | U-box domain-containing protein 21-like [Hibiscus syriacus] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3AY91 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG00082 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology