Basic Information
Locus ID:
nbisL1-mrna-11868
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 15562088 | 15566652 | + | nbisL1-mrna-11868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 56,440.99 Da | 42.94 | 66.71 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 259 | 385 | 2.2775E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 260 | 391 | 8.7E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 241 | 424 | 1.05E-41 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 215 | 480 | 5.1E-88 | IPR016135 |
| SMART | SM00212 | ubc_7 | 259 | 416 | 1.1E-22 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 256 | 416 | 36.352612 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 99 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15355.1 | ubiquitin-conjugating enzyme 25. | 0 |
| RefSeq | XP_021652625.1 | putative ubiquitin-conjugating enzyme E2 38 isoform X1 [Hevea brasiliensis] | 0 |
| Q9LUQ5 | Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana OX=3702 GN=UBC25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MNP9 | UBC core domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology