Basic Information
Locus ID:
nbisL1-mrna-11851
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 1765741 | 1768812 | + | nbisL1-mrna-11851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 36,261.01 Da | 50.45 | 71.89 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 271 | 311 | 4.51575E-24 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 270 | 316 | 2.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 317 | 2.12E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 259 | 321 | 5.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 272 | 310 | 3.1E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 250 | 322 | 1.6E-8 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 12 | 51 | 1100.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 272 | 311 | 11.309038 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021628088.1 | probable E3 ubiquitin-protein ligase LOG2 [Manihot esculenta] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IZ71 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology