Basic Information
Locus ID:
nbisL1-mrna-11810
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19992910 | 19996443 | - | nbisL1-mrna-11810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 55,491.86 Da | 47.58 | 80.98 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 157 | 225 | 1.1E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 16 | 112 | 9.4E-10 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 313 | 375 | 2.28E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 273 | 1.16E-29 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 114 | 1.5E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 122 | 267 | 1.5E-16 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 302 | 392 | 7.4E-8 | IPR013083 |
| SMART | SM00248 | ANK_2a | 91 | 121 | 0.98 | IPR002110 |
| SMART | SM00248 | ANK_2a | 200 | 231 | 3.9 | IPR002110 |
| SMART | SM00248 | ANK_2a | 157 | 186 | 7.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 57 | 86 | 1.4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 157 | 186 | 10.4977 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 200 | 225 | 8.789761 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 91 | 112 | 8.905817 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.89275 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 157 | 189 | 11.16695 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 91 | 112 | 8.923309 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 200 | 225 | 8.693567 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 475 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_039046487.1 | E3 ubiquitin-protein ligase XBAT33-like [Hibiscus syriacus] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6US87 | E3 ubiquitin-protein ligase XBAT33-like OS=Gossypium australe OX=47621 GN=EPI10_026561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology