Basic Information
Locus ID:
nbisL1-mrna-11781
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14238841 | 14242361 | + | nbisL1-mrna-11781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 54,212.68 Da | 59.40 | 60.98 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 386 | 443 | 1.2E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 216 | 262 | 1.6E-16 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 216 | 264 | 2.35E-16 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 377 | 445 | 1.19E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 370 | 446 | 1.9E-36 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 214 | 265 | 1.6E-17 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 217 | 263 | 2.8E-19 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 385 | 444 | 5.7E-40 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 380 | 445 | 37.929428 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 217 | 264 | 16.98317 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03340.1 | WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3). | 0 |
| RefSeq | XP_034915453.1 | probable WRKY transcription factor 3 [Populus alba] | 0 |
| Q9ZQ70 | Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LKB2 | Putative WRKY transcription factor 3 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology