Basic Information
Locus ID:
nbisL1-mrna-11768
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 1278598 | 1283434 | + | nbisL1-mrna-11768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 76,232.22 Da | 42.13 | 95.78 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 290 | 332 | 5.77263E-28 | - |
| Pfam | PF04564 | U-box domain | 286 | 356 | 9.7E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 414 | 452 | 1.0E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 578 | 617 | 2.6E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 496 | 534 | 4.9E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 362 | 7.32E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 384 | 662 | 1.04E-49 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 359 | 5.5E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 370 | 694 | 5.7E-57 | IPR011989 |
| SMART | SM00185 | arm_5 | 619 | 659 | 290.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 495 | 535 | 0.0017 | IPR000225 |
| SMART | SM00185 | arm_5 | 454 | 494 | 1.9 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 289 | 352 | 1.3E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 536 | 576 | 87.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 413 | 453 | 9.4E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 577 | 617 | 9.2 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 547 | 589 | 9.3274 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 285 | 359 | 45.884411 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 424 | 466 | 12.2324 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 506 | 548 | 8.5574 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 685 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYI5 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology