Basic Information
Locus ID:
nbisL1-mrna-11764
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19612551 | 19619083 | + | nbisL1-mrna-11764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 93,027.07 Da | 44.82 | 89.23 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 558 | 691 | 3.92522E-24 | - |
| Pfam | PF17862 | AAA+ lid domain | 712 | 753 | 5.9E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 560 | 690 | 4.5E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 520 | 754 | 1.22E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 519 | 802 | 2.7E-94 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 692 | 797 | 2.7E-94 | - |
| SMART | SM00382 | AAA_5 | 556 | 693 | 1.4E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 663 | 682 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 482 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_038993911.1 | uncharacterized protein LOC120117747 [Hibiscus syriacus] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A3CZT7 | Spastin OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000916pilonHSYRG00196 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology