Basic Information
Locus ID:
nbisL1-mrna-11757
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 1221434 | 1224310 | - | nbisL1-mrna-11757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 24,867.68 Da | 53.53 | 63.32 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 167 | 209 | 3.7E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 66 | 109 | 5.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 156 | 214 | 8.25E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 115 | 3.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 214 | 6.1E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 114 | 2.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 209 | 1.8E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 67 | 108 | 8.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 67 | 109 | 12.769585 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 209 | 11.441815 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14320.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021275289.1 | putative RING-H2 finger protein ATL53 [Herrania umbratica] | 0 |
| Q9LUL6 | Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1 | 0 | |
| TrEMBL | A0A4Y1RQG9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology