Basic Information
Locus ID:
nbisL1-mrna-11708
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 14386226 | 14396558 | + | nbisL1-mrna-11708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 235,728.41 Da | 44.88 | 106.40 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 156 | 384 | 4.5E-38 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 142 | 398 | 1.42E-43 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1608 | 1906 | 5.78E-6 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1835 | 2066 | 6.43E-13 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 489 | 886 | 5.29E-29 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1158 | 1531 | 1.18E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1297 | 1558 | 4.6E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1602 | 1816 | 1.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1157 | 1296 | 1.4E-9 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 129 | 297 | 1.6E-29 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 915 | 1048 | 2.7E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 486 | 900 | 5.0E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1825 | 2071 | 1.6E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1073 | 1153 | 5.9E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 301 | 387 | 6.1E-15 | IPR042197 |
| SMART | SM00382 | AAA_5 | 166 | 304 | 6.5E-6 | IPR003593 |
| PRINTS | PR00364 | Disease resistance protein signature | 169 | 184 | 1.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 334 | 348 | 1.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 242 | 256 | 1.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 580 | 596 | 1.6E-19 | - |
| Coils | Coil | Coil | 30 | 86 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_021665084.1 | - | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K1Y041 | NB-ARC domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G027300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology