Basic Information
Locus ID:
nbisL1-mrna-11673
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 2485291 | 2489745 | - | nbisL1-mrna-11673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 41,377.15 Da | 46.85 | 82.72 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.87992E-32 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 342 | 384 | 4.60474E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 266 | 321 | 2.0E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 346 | 381 | 8.4E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 163 | 198 | 2.1E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.6E-20 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 262 | 328 | 1.31E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 326 | 388 | 4.86E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 147 | 204 | 2.13E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 3.45E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 6.0E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 256 | 322 | 7.5E-28 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 1.0E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 338 | 385 | 1.3E-22 | - |
| SMART | SM00165 | uba_6 | 160 | 200 | 1.5E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 346 | 383 | 1.1E-8 | IPR015940 |
| SMART | SM00727 | CBM | 264 | 307 | 3.9E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.5E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 389 | 1.2E-115 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.958031 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 343 | 384 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 12.16134 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 372 | 387 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 340 | 356 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 292 | 314 | 1.2E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 357 | 371 | 1.2E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology