Basic Information
Locus ID:
nbisL1-mrna-11670
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
transcriptional co-repressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 14096611 | 14103461 | + | nbisL1-mrna-11670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 69,440.75 Da | 51.17 | 67.17 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08513 | LisH | 10 | 36 | 1.6E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 540 | 574 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 532 | 6.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 581 | 618 | 0.028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 627 | 1.17E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 475 | 632 | 1.9E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 493 | 532 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 578 | 618 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 574 | 2.3E-7 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 577 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 541 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 535 | 9.335602 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 542 | 577 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 585 | 620 | 9.539323 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 561 | 575 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 519 | 533 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 404 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015575986.2 | transcriptional corepressor LEUNIG_HOMOLOG-like [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | B9S534 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology