Basic Information
Locus ID:
nbisL1-mrna-11667
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000298F_pilon | 223881 | 226075 | + | nbisL1-mrna-11667 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 27,744.83 Da | 38.91 | 109.32 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 1 | 133 | 5.58183E-57 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 7 | 224 | 2.25E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 225 | 2.3E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 133 | 5.0E-47 | IPR027417 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 2 | 224 | 5.2E-72 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 126 | 13.124641 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.2 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021615791.1 | ATP-dependent DNA helicase Q-like 3 isoform X2 [Manihot esculenta] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JLU5 | Uncharacterized protein MANES_01G152300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology