Basic Information
Locus ID:
nbisL1-mrna-11657
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 13999539 | 14001011 | + | nbisL1-mrna-11657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.84 | 19,687.27 Da | 58.26 | 69.32 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24750.1 | 0 | |
| RefSeq | XP_021645987.1 | uncharacterized protein LOC110639380 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2ILE2 | Remorin_C domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35496, jg37768, jg8623 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5354 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028223 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26506, Sbi_jg34058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15036 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011953 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73787, Sgl77292 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007985, gene:ENSEOMG00000037997 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0010710 |
| Apiaceae | Apium graveolens | 3 | Ag2G01259, Ag7G00060, Ag9G02873 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G011320, COCNU_09G009020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104320, gene-LOC120104382 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1459.V1.1, AsparagusV1_07.1932.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G34097 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002691m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22490.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g035810.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1528 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015113 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13937, Lb5G28687 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.18, BH06.9, CH06.10 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0505490, gene-QOZ80_6BG0457560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0634490.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G000160 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404068, Pt_Chr0404089 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G000930, Chr14G000020, Chr14G000360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G011700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4AG070710 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G498800.2, TraesCS7A02G001800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379630_P001 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.989, evm.TU.LG04.285, evm.TU.LG12.743 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1190 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11657 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9854 |
| Salicaceae | Populus euphratica | 1 | populus_peu30932 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609987, gene-LOC132626678 |
| Solanaceae | Solanum chilense | 2 | SOLCI004651500, SOLCI004978000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021219, gene-LOC107030741 |