Basic Information
Locus ID:
nbisL1-mrna-11653
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
(NAC) domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 2322690 | 2326945 | + | nbisL1-mrna-11653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 48,223.95 Da | 40.93 | 71.80 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 56 | 194 | 9.2E-21 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 40 | 213 | 4.05E-38 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 64 | 218 | 6.5E-29 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 55 | 213 | 31.605526 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 374 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_021649926.1 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 [Hevea brasiliensis] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JQB8 | NAC transcription factors 7 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology