Basic Information
Locus ID:
nbisL1-mrna-11647
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
elongator complex protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 2249204 | 2256327 | - | nbisL1-mrna-11647 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 93,073.66 Da | 40.50 | 87.35 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 695 | 725 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 352 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 447 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 57 | 104 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 264 | 0.11 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 457 | 841 | 4.58E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 449 | 3.94E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 585 | 681 | 6.7E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 682 | 844 | 6.6E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 277 | 5.4E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 411 | 539 | 5.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 176 | 6.0E-16 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 290 | 410 | 4.6E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 55 | 105 | 6.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 732 | 776 | 72.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 726 | 2.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 155 | 0.72 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 264 | 0.088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 353 | 5.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 677 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 503 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 793 | 842 | 2.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 402 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 635 | 6.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 694 | 735 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 694 | 728 | 10.021053 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 340 | 354 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 4.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 713 | 727 | 4.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49540.1 | elongator protein 2. | 0 |
| RefSeq | XP_021592226.1 | elongator complex protein 2 [Manihot esculenta] | 0 |
| F4I1S7 | Elongator complex protein 2 OS=Arabidopsis thaliana OX=3702 GN=ELP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2J6J1 | Uncharacterized protein MANES_14G107300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5217, jg5231 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4074 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025578, Ah026006, Ah026010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12863, Sbi_jg53008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027768 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33131, Sgl38383 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001994, gene:ENSEOMG00000002926 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013230, CQ.Regalona.r1.6BG0014380 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30215110, pistato.v30215540 |
| Apiaceae | Apium graveolens | 1 | Ag6G00526 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002220 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1112.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G15124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49540.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011237m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g36390.v2.2, Sp1g36410.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g061070.2N, BniB07g006270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2242 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0657s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019163, Pov_00040828 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05770, Lb5G27517 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1919, BH08.2010, CH08.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0635580, gene-QOZ80_8BG0664380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0021770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018631 |
| Poaceae | Oryza coarctata | 1 | Oco15G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g38570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G175600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G000360, Chr29G003100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G184600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015670, gene_TRIDC1BG016900 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G104700.1, TraesCS1B02G116100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47610 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23184 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1898, evm.TU.LG14.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g02540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.126 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15623, nbisL1-mrna-2951 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17460 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.75 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004689 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11647 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2808 |
| Salicaceae | Populus euphratica | 3 | populus_peu07105, populus_peu21078, populus_peu21079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605667, gene-LOC132606061 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022021 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16745_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1425 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11250.v3.1 |