Basic Information
Locus ID:
nbisL1-mrna-11639
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
BAG family molecular chaperone regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 615824 | 617822 | - | nbisL1-mrna-11639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 29,701.78 Da | 45.18 | 89.32 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02179 | BAG domain | 139 | 213 | 2.5E-12 | IPR003103 |
| Pfam | PF00240 | Ubiquitin family | 44 | 111 | 2.6E-8 | IPR000626 |
| SUPERFAMILY | SSF63491 | BAG domain | 99 | 219 | 1.83E-18 | IPR036533 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 39 | 117 | 1.43E-15 | IPR029071 |
| Gene3D | G3DSA:1.20.58.120 | BAG domain | 114 | 219 | 2.0E-37 | IPR036533 |
| Gene3D | G3DSA:3.10.20.90 | - | 42 | 113 | 5.1E-23 | - |
| SMART | SM00264 | BAG_1 | 134 | 215 | 3.8E-7 | IPR003103 |
| ProSiteProfiles | PS51035 | BAG domain profile. | 134 | 215 | 11.178264 | IPR003103 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 42 | 112 | 13.467295 | IPR000626 |
| Coils | Coil | Coil | 131 | 158 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51780.1 | BCL-2-associated athanogene 4. A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. | 0 |
| RefSeq | XP_023891537.1 | BAG family molecular chaperone regulator 4-like isoform X1 [Quercus suber] | 0 |
| Q8RX71 | BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana OX=3702 GN=BAG4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JRK4 | Uncharacterized protein MANES_18G141400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3242 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15220 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003288 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4802, Sbi_jg7279 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12727 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001447 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04459, Sgl09508, Sgl51668, Sgl53200, Sgl56976, Sgl58464 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004828, gene:ENSEOMG00000021253 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010500, CQ.Regalona.r1.5BG0010980 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30061130, pistato.v30064900, pistato.v30267480 |
| Apiaceae | Apium graveolens | 2 | Ag5G01619, Ag8G00067 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003460, COCNU_12G006700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722772 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.286.V1.1, AsparagusV1_08.3404.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G28631, Ftri10G32921 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G51780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010632m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10490.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037980.2N, BniB02g074480.2N, BniB08g065890.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0986, Ceq08G1843 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1004, Cgl08G1900 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18020 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g16740, gene.Thate06g02730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-5514, nbisL1-mrna-5841, nbisL1-mrna-615 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.974, evm.TU.LG09.1060 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002693 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb0G37405, Lb2G09239, Lb2G09240, Lb2G09257, Lb2G09258 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3762, BH02.3773, BH07.4087 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038740, gene-QOZ80_1BG0088760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0303840.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_055615, gene-QYE76_055814 |
| Poaceae | Oryza coarctata | 2 | Oco01G024030, Oco02G024800 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g61500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G325100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0601916, Pt_Chr0601917, Pt_Chr0602006 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G005620, Chr03G019360, Chr05G027770, Chr08G022700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G562400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG050500, gene_TRIDC3BG056840 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G350700.1, TraesCS3B02G383300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb148980_P001, Zm00001eb368400_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11512 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8932 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2823, evm.TU.LG16.833, evm.TU.LG18.525 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37370, gene.Posoc07g13880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.106, evm.TU.Scaffold_1_RagTag.1844 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24692, nbisL1-mrna-4601 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1366, nbisL1-mrna-15488 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19411, nbisL1-mrna-3677 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.713, evm.TU.utg000027l.504 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00016786, Maker00018080 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4938, nbisL1-mrna-5490 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11639, nbisL1-mrna-13782 |
| Salicaceae | Populus euphratica | 3 | populus_peu01736, populus_peu25409, populus_peu36074 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605792, gene-LOC132606991 |
| Solanaceae | Solanum chilense | 1 | SOLCI001037200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021738, gene-LOC107032005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24935_chr08_+, gene_12261 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2783, TC06G0267 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32440.v3.1, Zosma02g21760.v3.1 |