Basic Information
Locus ID:
nbisL1-mrna-11632
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 13767520 | 13771271 | - | nbisL1-mrna-11632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 61,870.67 Da | 47.83 | 86.56 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 239 | 533 | 4.74403E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 533 | 3.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 319 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 491 | 0.048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 4.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 363 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 232 | 533 | 3.66E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 227 | 533 | 8.2E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 5.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 534 | 2.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 445 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 491 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 363 | 7.7E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 533 | 11.128319 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 72 | 129 | 8.640035 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 39 | 71 | 8.375285 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 275 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 543 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 323 | 10.864685 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 275 | 9.256512 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021631089.1 | WD repeat-containing protein WDS homolog isoform X1 [Manihot esculenta] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JV79 | Uncharacterized protein MANES_12G039300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology