Basic Information
Locus ID:
nbisL1-mrna-11625
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 13701171 | 13709443 | - | nbisL1-mrna-11625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 169,960.77 Da | 39.44 | 109.51 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 640 | 839 | 5.74083E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 614 | 1.12096E-104 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1282 | 1502 | 1.20761E-126 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 965 | 1259 | 7.53538E-94 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 329 | 594 | 3.1E-31 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 967 | 1209 | 8.9E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1301 | 1449 | 1.6E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 660 | 792 | 7.9E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 964 | 1264 | 6.41E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 636 | 862 | 2.71E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 622 | 2.35E-39 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1276 | 1514 | 1.81E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 638 | 868 | 1.9E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1268 | 1520 | 6.0E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 292 | 623 | 2.6E-56 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 926 | 1264 | 7.6E-59 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1310 | 1495 | 1.8E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 667 | 848 | 1.9E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 967 | 1237 | 36.240685 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1284 | 1518 | 17.633852 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 640 | 863 | 22.802561 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 329 | 606 | 37.49371 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 765 | 779 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 914 | 939 | - | - |
| Coils | Coil | Coil | 922 | 942 | - | - |
| Coils | Coil | Coil | 285 | 305 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021630976.2 | ABC transporter C family member 5 [Manihot esculenta] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2KA88 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology