Basic Information
Locus ID:
nbisL1-mrna-11624
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18443620 | 18445011 | + | nbisL1-mrna-11624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 52,076.51 Da | 41.10 | 81.62 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 15 | 194 | 1.3E-48 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 288 | 333 | 4.5E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 282 | 350 | 3.4E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 279 | 349 | 2.2E-16 | IPR036638 |
| SMART | SM00353 | finulus | 290 | 339 | 1.7E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 284 | 333 | 17.396311 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 295 | - | - |
| Coils | Coil | Coil | 323 | 350 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_039022759.1 | transcription factor MYC2-like [Hibiscus syriacus] | 0 |
| Q39204 | Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A2YWW9 | Transcription factor MYC2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111166pilonHSYRG00330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology