Basic Information
Locus ID:
nbisL1-mrna-11621
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18388048 | 18398717 | - | nbisL1-mrna-11621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 48,123.58 Da | 58.60 | 82.64 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 217 | 266 | 2.64547E-29 | - |
| CDD | cd01805 | Ubl_Rad23 | 75 | 129 | 1.08406E-18 | - |
| Pfam | PF09280 | XPC-binding domain | 329 | 385 | 1.7E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 410 | 445 | 6.7E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 75 | 131 | 2.4E-11 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 226 | 261 | 3.1E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 208 | 267 | 2.67E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 73 | 137 | 1.89E-14 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 391 | 452 | 2.55E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 326 | 391 | 8.11E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 402 | 450 | 1.6E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 63 | 135 | 1.1E-17 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 216 | 266 | 3.3E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 320 | 385 | 2.3E-27 | IPR036353 |
| SMART | SM00165 | uba_6 | 410 | 447 | 1.9E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 223 | 263 | 9.6E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 57 | 130 | 6.7E-7 | IPR000626 |
| SMART | SM00727 | CBM | 327 | 370 | 1.6E-6 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 75 | 453 | 4.3E-109 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 221 | 264 | 12.233631 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 407 | 448 | 14.089108 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 75 | 134 | 14.077005 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 404 | 420 | 3.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 421 | 435 | 3.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 436 | 451 | 3.9E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 377 | 3.9E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 183 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_039047183.1 | ubiquitin receptor RAD23c-like isoform X1 [Hibiscus syriacus] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A2XH07 | Ubiquitin receptor RAD23c OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00113725pilonHSYRG00123 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology