Basic Information
Locus ID:
nbisL1-mrna-11618
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 488308 | 498003 | - | nbisL1-mrna-11618 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 96,290.05 Da | 54.90 | 76.79 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 158 | 309 | 6.15205E-31 | - |
| CDD | cd00821 | PH | 34 | 123 | 6.7925E-11 | - |
| Pfam | PF00169 | PH domain | 35 | 127 | 2.3E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 608 | 688 | 2.1E-21 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 158 | 314 | 5.8E-30 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 36 | 136 | 7.4E-16 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 158 | 363 | 2.16E-32 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 28 | 131 | 2.8E-13 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 132 | 363 | 8.3E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 155 | 358 | 4.5E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 5 | 130 | 5.4E-13 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 149 | 361 | 29.89139 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 4 | 128 | 13.1426 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 418 | - | - |
| Coils | Coil | Coil | 598 | 632 | - | - |
| Coils | Coil | Coil | 657 | 691 | - | - |
| Coils | Coil | Coil | 573 | 593 | - | - |
| Coils | Coil | Coil | 818 | 845 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_002314002.4 | - | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology