Basic Information
Locus ID:
nbisL1-mrna-11606
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1848330 | 1852347 | + | nbisL1-mrna-11606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 43,788.29 Da | 40.49 | 92.26 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 226 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 172 | 193 | 0.039 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 61 | 369 | 1.18E-37 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 61 | 377 | 5.4E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 199 | 237 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 371 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 195 | 0.041 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 246 | 9.138305 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_002526027.1 | SEC12-like protein 2 [Ricinus communis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology