Basic Information
Locus ID:
nbisL1-mrna-11605
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Phosphate-induced protein 1 conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002125F_pilon | 403017 | 404226 | + | nbisL1-mrna-11605 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 31,539.92 Da | 37.50 | 87.13 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF49854 | Spermadhesin, CUB domain | 118 | 207 | 3.93E-9 | IPR035914 |
| Gene3D | G3DSA:2.60.120.290 | Spermadhesin, CUB domain | 107 | 210 | 8.4E-8 | IPR035914 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_043815986.1 | - | 0 |
| TrEMBL | A0A2C9WMA1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30051130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.63, evm.TU.Scaffold_12_RagTag.64 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24736 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.250 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18901 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11605 |