Basic Information
Locus ID:
nbisL1-mrna-11598
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Arm repeat protein interacting with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 4888261 | 4897009 | - | nbisL1-mrna-11598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 94,999.62 Da | 46.61 | 96.40 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 266 | 301 | 2.2E-6 | IPR000225 |
| Pfam | PF01926 | 50S ribosome-binding GTPase | 725 | 813 | 1.8E-10 | IPR006073 |
| SUPERFAMILY | SSF54695 | POZ domain | 520 | 568 | 8.63E-7 | IPR011333 |
| SUPERFAMILY | SSF48371 | ARM repeat | 155 | 484 | 1.56E-40 | IPR016024 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 659 | 762 | 6.84E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 707 | 799 | 3.7E-12 | IPR027417 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 498 | 598 | 4.5E-16 | IPR011333 |
| Gene3D | G3DSA:1.25.10.10 | - | 149 | 338 | 7.2E-35 | IPR011989 |
| Gene3D | G3DSA:3.40.50.300 | - | 653 | 706 | 5.5E-6 | IPR027417 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 492 | 6.5E-20 | IPR011989 |
| SMART | SM00185 | arm_5 | 212 | 260 | 0.0028 | IPR000225 |
| SMART | SM00185 | arm_5 | 262 | 302 | 2.9E-8 | IPR000225 |
| SMART | SM00185 | arm_5 | 304 | 371 | 0.13 | IPR000225 |
| SMART | SM00185 | arm_5 | 444 | 484 | 4.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 159 | 211 | 16.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 223 | 273 | 9.3274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 273 | 308 | 12.127399 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 88 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19330.1 | ARM repeat protein interacting with ABF2. Encodes an armadillo repeat protein involved in the abscisic acid response. The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. | 0 |
| RefSeq | XP_043806996.1 | ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X6 [Manihot esculenta] | 0 |
| B9DHT4 | ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana OX=3702 GN=ARIA PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6MQM4 | BTB domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_037027 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16125, jg8797 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15577, gene_5045 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020278, Ah030075 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163130 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10326, Sbi_jg16118, Sbi_jg23526, Sbi_jg5119 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13145, Seu_jg24634 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003890 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00078, Sgl05165, Sgl72016, Sgl75585 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013730, gene:ENSEOMG00000031011 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0015080, CQ.Regalona.r1.3AG0015560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30027170, pistato.v30237070 |
| Apiaceae | Apium graveolens | 2 | Ag2G02393, Ag9G02146 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016940, COCNU_16G001330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723614 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1797.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G19206, Ftri12G20753 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G13060.1, AT5G19330.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012773m.g.v1.0, Thhalv10012813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g25080.v2.2, Sp6g30920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g043360.2N, BniB02g043420.2N, BniB02g049440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G2070, Ceq06G2073, Ceq09G1320 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1410 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04010, gene.Cymno05g03760 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0135s00028.v1.0, Dusal.1046s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g23970, gene.Thate05g25980, gene.Thate09g10230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1070, evm.TU.LG07.220, evm.TU.LG11.1074 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008077 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24802, Lb8G36615 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2553, BH05.2648, BH08.2275, CH06.1521 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374120, gene-QOZ80_5BG0422180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0063780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013381 |
| Poaceae | Oryza coarctata | 2 | Oco09G009450, Oco10G009180 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33050.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G076500, gene-BS78_09G136000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505163, Pt_Chr0505419 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021030, Chr12G016930, Chr18G008580, Chr22G009030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G414200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037460, gene_TRIDC1BG042510 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G249400.1, TraesCS1B02G260100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287530_P001, Zm00001eb349910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23773, nbis-gene-23774 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28198 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.216, evm.TU.LG04.536, evm.TU.LG06.1719 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.984, evm.TU.Scaffold_6_RagTag.722 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15968 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4151, nbisL1-mrna-5068 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11598, nbisL1-mrna-604 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.303, evm.TU.utg000011l.435 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007486, Maker00014040 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15338, nbisL1-mrna-9985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3450, nbisL1-mrna-7605 |
| Salicaceae | Populus euphratica | 5 | populus_peu07356, populus_peu15039, populus_peu21355 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608139, gene-LOC132610958 |
| Solanaceae | Solanum chilense | 2 | SOLCI002234300, SOLCI006754000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023416, gene-LOC107031538 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1228 |
| Zosteraceae | Zostera marina | 2 | Zosma01g37860.v3.1, Zosma02g23080.v3.1 |