Basic Information
Locus ID:
nbisL1-mrna-11586
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 18122584 | 18123096 | + | nbisL1-mrna-11586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 18,570.91 Da | 27.85 | 91.88 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 92 | 154 | 1.33646E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 92 | 153 | 5.0E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 16 | 76 | 2.2E-10 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 9 | 155 | 7.69E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 86 | 2.1E-17 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 87 | 163 | 2.2E-22 | - |
| SMART | SM00054 | efh_1 | 92 | 120 | 1.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 53 | 81 | 2.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 128 | 156 | 1.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 0.059 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 9.408546 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 88 | 123 | 14.373928 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 12.979158 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 124 | 159 | 12.588623 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 137 | 149 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 101 | 113 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_016736307.1 | probable calcium-binding protein CML15 [Gossypium hirsutum] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J9C745 | Calcium-binding protein CML16 OS=Gossypium gossypioides OX=34282 GN=Gogos_006692 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology