Basic Information
Locus ID:
nbisL1-mrna-11554
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1280633 | 1282331 | + | nbisL1-mrna-11554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 30,109.63 Da | 36.08 | 78.15 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5 | 66 | 6.5E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2 | 78 | 1.51E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 72 | 1.0E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 3 | 72 | 3.9E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 76 | 11.247069 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 281 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021293178.1 | binding partner of ACD11 1 [Herrania umbratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1B1Q0 | binding partner of ACD11 1 OS=Herrania umbratica OX=108875 GN=LOC110423315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology