Basic Information
Locus ID:
nbisL1-mrna-11529
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 4492803 | 4495878 | - | nbisL1-mrna-11529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 58,657.16 Da | 47.17 | 100.09 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 7 | 53 | 1.4E-25 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 299 | 458 | 1.23E-15 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 25 | 286 | 8.24E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 517 | 1.9E-182 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 70 | 95 | 68.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 421 | 445 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 254 | 277 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 372 | 395 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 45 | 69 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 312 | 336 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 96 | 133 | 650.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_012082666.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2M9Y6 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology