Basic Information
Locus ID:
nbisL1-mrna-11520
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 4448399 | 4451848 | + | nbisL1-mrna-11520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 67,199.80 Da | 45.06 | 99.15 | -0.24 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03010.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_041016770.1 | BTB/POZ domain-containing protein At1g03010-like isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9SA69 | BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana OX=3702 GN=At1g03010 PE=2 SV=1 | 0 | |
| TrEMBL | A0A061DQ73 | Phototropic-responsive NPH3 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_004557 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35221, jg37918, jg8861 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5181 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029847 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35616, Sbi_jg989 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3737 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026459 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl13092, Sgl13093, Sgl18309, Sgl33059, Sgl38297 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006089, gene:ENSEOMG00000033994 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014030, CQ.Regalona.r1.7BG0015970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009760 |
| Apiaceae | Apium graveolens | 3 | Ag10G01842, Ag2G02543, Ag9G02221 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698243 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1530.V1.1, AsparagusV1_09.450.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G08286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03010.1, AT2G47860.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007049m.g.v1.0, Thhalv10010186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02000.v2.2, Sp5g13750.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001040.2N, BniB03g038430.2N, BniB05g052920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1599 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1663 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05580, gene.Cymno05g04740 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g27050, gene.Thate06g23390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2958, nbisL1-mrna-6277 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.285 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008245, Pov_00025912 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23585, Lb4G23601, Lb5G27976 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3649, BH01.3995, CH01.4269 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0248140, gene-QOZ80_3BG0280140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067902 |
| Poaceae | Oryza coarctata | 2 | Oco05G013430, Oco06G012990 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g22600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G355600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102714 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G011300, Chr07G010680, Chr0G033570, Chr12G005050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G716600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5BG069960, gene_TRIDC7AG022960 |
| Poaceae | Triticum aestivum | 3 | TraesCS5B02G461900.4, TraesCS5D02G463700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb394770_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1593 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1216 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.162, evm.TU.LG03.798, evm.TU.LG04.591 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.899 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11448, nbisL1-mrna-21382 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20261 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11520 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012987 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10054 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7515 |
| Salicaceae | Populus euphratica | 3 | populus_peu09346, populus_peu27216, populus_peu27217 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608483, gene-LOC132610739 |
| Solanaceae | Solanum chilense | 1 | SOLCI001551300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029745 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7097 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0266, TC01G0271, TC01G0279 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20420.v3.1 |