Basic Information
Locus ID:
nbisL1-mrna-11516
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 3643232 | 3650878 | + | nbisL1-mrna-11516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 91,758.57 Da | 39.92 | 78.74 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 340 | 413 | 3.58303E-23 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 341 | 411 | 3.5E-7 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 423 | 775 | 1.6E-30 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 326 | 420 | 2.75E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 224 | 776 | 2.24E-75 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 576 | 742 | 8.3E-219 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 209 | 308 | 2.2E-14 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 371 | 793 | 8.3E-219 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 7 | 168 | 3.0E-43 | IPR043151 |
| SMART | SM00439 | BAH_4 | 71 | 183 | 2.0E-11 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 71 | 183 | 17.911316 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 340 | 411 | 9.824401 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 224 | 783 | 43.057865 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 517 | 530 | 6.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 471 | 485 | 6.2E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 225 | 241 | 6.2E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021606189.1 | DNA (cytosine-5)-methyltransferase CMT3 [Manihot esculenta] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W5R9 | Cytosine-specific methyltransferase OS=Manihot esculenta OX=3983 GN=MANES_03G089100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology