Basic Information
Locus ID:
nbisL1-mrna-11511
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000062F_pilon | 4355498 | 4359376 | - | nbisL1-mrna-11511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 47,719.42 Da | 52.84 | 81.17 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 329 | 0.0068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 342 | 1.83E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 410 | 6.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 289 | 330 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 199 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 71 | 109 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.024 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021647869.1 | autophagy-related protein 18a-like [Hevea brasiliensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL31 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology