Basic Information
Locus ID:
nbisL1-mrna-11506
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10329861 | 10337579 | - | nbisL1-mrna-11506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 120,853.63 Da | 54.30 | 67.12 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 573 | 875 | 1.69434E-130 | - |
| Pfam | PF01753 | MYND finger | 77 | 114 | 1.9E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 572 | 874 | 2.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 568 | 880 | 2.94E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 6.63E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 564 | 884 | 4.0E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 117 | 5.1E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 572 | 877 | 50.918152 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.827362 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 573 | 588 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1041 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 953 | 983 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_011016914.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Populus euphratica] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7B7 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology