Basic Information
Locus ID:
nbisL1-mrna-11499
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17293840 | 17295483 | + | nbisL1-mrna-11499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 38,515.15 Da | 42.34 | 88.02 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 282 | 321 | 1.3E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 276 | 326 | 1.22E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 86 | 200 | 4.45E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 79 | 2.22E-7 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 76 | 218 | 1.1E-13 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 269 | 325 | 2.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 279 | 321 | 10.95451 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_039069394.1 | F-box protein At1g67340-like [Hibiscus syriacus] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2WWI3 | MYND-type domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A12G204400v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology