Basic Information
Locus ID:
nbisL1-mrna-11495
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
BEACH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10195387 | 10224315 | - | nbisL1-mrna-11495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 376,953.81 Da | 46.36 | 96.23 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06071 | Beach | 2700 | 2975 | 1.96001E-147 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3110 | 3146 | 8.4E-6 | IPR001680 |
| Pfam | PF16057 | Domain of unknown function (DUF4800) | 2308 | 2401 | 1.5E-8 | - |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2514 | 2658 | 1.3E-11 | IPR023362 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3175 | 3209 | 0.0088 | IPR001680 |
| Pfam | PF02138 | Beige/BEACH domain | 2699 | 2975 | 2.9E-119 | IPR000409 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 1430 | 1708 | 9.2E-82 | IPR031570 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1178 | 1368 | 4.22E-18 | IPR013320 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2507 | 2661 | 9.22E-18 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3086 | 3345 | 6.62E-43 | IPR036322 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2695 | 2975 | 2.62E-122 | IPR036372 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2689 | 2975 | 3.6E-134 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 3028 | 3358 | 6.3E-40 | IPR015943 |
| Gene3D | G3DSA:1.25.10.10 | - | 952 | 1182 | 1.4E-5 | IPR011989 |
| Gene3D | G3DSA:2.30.29.30 | - | 2506 | 2658 | 4.1E-17 | IPR011993 |
| Gene3D | G3DSA:2.60.120.200 | - | 1183 | 1375 | 1.1E-9 | - |
| SMART | SM00320 | WD40_4 | 3298 | 3336 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3173 | 3212 | 0.0047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3215 | 3255 | 21.0 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2697 | 2975 | 3.2E-199 | IPR000409 |
| SMART | SM00320 | WD40_4 | 3257 | 3295 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3108 | 3147 | 1.8E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3115 | 3148 | 10.943775 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2685 | 2975 | 121.093559 | IPR000409 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2503 | 2661 | 25.649443 | IPR023362 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3115 | 3148 | 13.181907 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 3134 | 3148 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2485 | 2500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2483 | 2503 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58230.2 | - | 0 |
| RefSeq | XP_015579782.2 | BEACH domain-containing protein B isoform X1 [Ricinus communis] | 0 |
| F4I9T0 | BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1 | 0 | |
| TrEMBL | A0A4U5PQ03 | BEACH domain-containing protein lvsC isoform X1 OS=Populus alba OX=43335 GN=D5086_0000196080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10790 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23020 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023609 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005590, BVRB_8g186960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4253, Sbi_jg49553 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26743, Seu_jg5687 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000967 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10659, Sgl15910, Sgl15913 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012635, gene:ENSEOMG00000033156 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0009940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042080 |
| Apiaceae | Apium graveolens | 2 | Ag3G00077, Ag3G00078 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710848, gene-LOC103724019 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G18086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G58230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023210m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g05370.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g045450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1062 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1146, Cgl03G1151 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.238 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026720 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01720 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.2704, AH07.454, BH06.2500, BH06.2502, BH06.2503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0102520, gene-QOZ80_2BG0155830 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0566040.1, HORVU.MOREX.r3.7HG0734680.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_020718, gene-QYE76_036009, gene-QYE76_036010 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G003080, Oco04G003000, Oco11G015200 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g06720.1, LOC_Os02g06725.1, LOC_Os06g46480.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G047100, gene-BS78_10G231000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202503, Pt_Chr0202507, Pt_Chr0401235 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G020350, Chr10G020360, Chr10G020370, Chr10G020380 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G289700, Tel7E01G777900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018570, gene_TRIDC6BG024550 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G137700.1, TraesCS6B02G166100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb207540_P001, Zm00001eb273770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29909, nbis-gene-9741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14988 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1595, evm.TU.LG10.1315 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4929 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20554, nbisL1-mrna-20555, nbisL1-mrna-20557 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11495 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17054 |
| Salicaceae | Populus euphratica | 1 | populus_peu32130 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627641 |
| Solanaceae | Solanum chilense | 1 | SOLCI000394400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017626 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3890 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2294 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00980.v3.1 |