Basic Information
Locus ID:
nbisL1-mrna-11490
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10121551 | 10130787 | + | nbisL1-mrna-11490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 97,119.55 Da | 37.70 | 82.86 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10145 | TFIIA_gamma_N | 769 | 816 | 2.00034E-21 | IPR015872 |
| CDD | cd10014 | TFIIA_gamma_C | 822 | 867 | 4.65911E-22 | IPR015871 |
| CDD | cd10316 | RGL4_M | 369 | 465 | 2.85906E-35 | IPR029413 |
| CDD | cd10320 | RGL4_N | 48 | 339 | 1.41231E-76 | - |
| CDD | cd10317 | RGL4_C | 477 | 624 | 7.73081E-45 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 476 | 623 | 2.0E-33 | IPR029411 |
| Pfam | PF02751 | Transcription initiation factor IIA, gamma subunit | 825 | 866 | 1.7E-20 | IPR015871 |
| Pfam | PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain | 769 | 814 | 5.2E-21 | IPR015872 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 389 | 460 | 2.6E-25 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 43 | 238 | 1.0E-85 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 365 | 459 | 9.02E-10 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 49 | 335 | 3.45E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 472 | 624 | 1.11E-37 | IPR008979 |
| SUPERFAMILY | SSF50784 | Transcription factor IIA (TFIIA), beta-barrel domain | 817 | 867 | 2.62E-18 | IPR009088 |
| SUPERFAMILY | SSF47396 | Transcription factor IIA (TFIIA), alpha-helical domain | 769 | 819 | 8.89E-16 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 367 | 462 | 3.1E-9 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 474 | 624 | 1.0E-11 | - |
| Gene3D | G3DSA:1.10.287.190 | - | 768 | 819 | 6.6E-23 | IPR009083 |
| Gene3D | G3DSA:2.70.98.10 | - | 44 | 309 | 5.1E-8 | IPR014718 |
| Gene3D | G3DSA:2.30.18.10 | - | 820 | 870 | 5.9E-22 | IPR009088 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 764 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_021675902.1 | uncharacterized protein LOC110661550 [Hevea brasiliensis] | 0 |
| A2XZI2 | Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2 | 0 | |
| TrEMBL | A0A8X8AGH3 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_007986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology