Basic Information
Locus ID:
nbisL1-mrna-11489
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 10109813 | 10114922 | + | nbisL1-mrna-11489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 72,503.75 Da | 30.88 | 76.35 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 11 | 304 | 1.38554E-82 | - |
| CDD | cd10316 | RGL4_M | 334 | 433 | 8.55533E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 445 | 631 | 2.31156E-57 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 357 | 429 | 2.4E-24 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 203 | 1.1E-90 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 443 | 630 | 2.0E-57 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 440 | 631 | 1.28E-49 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 334 | 426 | 1.12E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 294 | 5.96E-5 | IPR011013 |
| Gene3D | G3DSA:2.60.120.260 | - | 441 | 631 | 9.7E-19 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 332 | 430 | 1.2E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 8 | 310 | 7.9E-8 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021646095.1 | rhamnogalacturonate lyase B-like isoform X2 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A5N5NMI1 | rhamnogalacturonan endolyase OS=Salix brachista OX=2182728 GN=DKX38_002593 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology