Basic Information
Locus ID:
nbisL1-mrna-11479
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002122F_pilon | 3396657 | 3407114 | - | nbisL1-mrna-11479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 115,242.29 Da | 52.12 | 77.42 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 130 | 4.1797E-39 | - |
| Pfam | PF00069 | Protein kinase domain | 421 | 676 | 9.8E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 400 | 678 | 7.28E-69 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 493 | 697 | 1.3E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 388 | 492 | 2.5E-23 | - |
| SMART | SM00220 | serkin_6 | 420 | 689 | 6.3E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 420 | 682 | 35.919453 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 538 | 550 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 825 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 174 | - | - |
| Coils | Coil | Coil | 334 | 368 | - | - |
| Coils | Coil | Coil | 288 | 315 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_021681652.1 | U-box domain-containing protein 52-like [Hevea brasiliensis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JYF2 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_22570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5501 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028579 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26779, Sbi_jg26780, Sbi_jg33787 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011717 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73636, Sgl77100 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007632, gene:ENSEOMG00000034489 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007860, CQ.Regalona.r1.9BG0008150 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028380, pistato.v30132220 |
| Apiaceae | Apium graveolens | 2 | Ag11G03959, Ag3G02673 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019770 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713130 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3547.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G34104 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G16770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g14920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g006770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1102 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0064s00016.v1.0, Dusal.0064s00017.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.619 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019873 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15469 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3419, BH01.3772, BH07.4227, CH01.4022 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101380, gene-QOZ80_2BG0154720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0557570.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002240, Oco04G002170 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G150900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207623 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G245600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG014660, gene_TRIDC6BG020030 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G111700.1, TraesCS6B02G139800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12181 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1224, evm.TU.LG12.562 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10255 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13119 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17767 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.924 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3085 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11479 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632699 |
| Solanaceae | Solanum chilense | 1 | SOLCI001789200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013812 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4393 |