Basic Information
Locus ID:
nbisL1-mrna-11460
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 12373057 | 12376747 | + | nbisL1-mrna-11460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 48,102.77 Da | 54.92 | 79.09 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 333 | 0.0069 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 88 | 336 | 2.29E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 94 | 419 | 1.3E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 203 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 334 | 0.017 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_012082714.1 | autophagy-related protein 18a [Jatropha curcas] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL31 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology