Basic Information
Locus ID:
nbisL1-mrna-11454
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 9673937 | 9679096 | - | nbisL1-mrna-11454 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 90,536.56 Da | 40.12 | 86.80 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 236 | 6.4E-4 | IPR001680 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | 16 | 252 | 1.44E-12 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 174 | 679 | 3.05E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 145 | 261 | 5.3E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 262 | 466 | 3.0E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 144 | 1.0E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 500 | 721 | 7.7E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 635 | 673 | 300.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 327 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 576 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 285 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 96 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 236 | 9.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 191 | 130.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 336 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 204 | 245 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 204 | 236 | 9.783781 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 168 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G07410.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_002301144.1 | WD repeat-containing protein PCN [Populus trichocarpa] | 0 |
| Q8RXU6 | WD repeat-containing protein PCN OS=Arabidopsis thaliana OX=3702 GN=PCN PE=2 SV=1 | 0 | |
| TrEMBL | B9GNN7 | WD_REPEATS_REGION domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G117500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10729, jg10730, jg6198 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6014 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036674 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014870 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39660, Sbi_jg54674 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14665 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12536, Sgl17809 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016372, gene:ENSEOMG00000034312 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0017340, CQ.Regalona.r1.1BG0005660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042950 |
| Apiaceae | Apium graveolens | 4 | Ag10G00567, Ag1G00606, Ag3G00106, Ag4G02178 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010260, COCNU_09G007280 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698302, gene-LOC103721867 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.906.V1.1, AsparagusV1_07.2078.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G01902, Ftri10G02247, Ftri3G23168 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G27470.1, AT4G07410.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006817m.g.v1.0, Thhalv10028433m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g23720.v2.2, Sp6g10450.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g017670.2N, BniB04g041860.2N, BniB08g034270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1380 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1403s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g30840 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5353 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.323 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037078 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23335 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.690, BH01.834, CH01.845 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0217280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340180.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062061, gene-QYE76_062075 |
| Poaceae | Oryza coarctata | 2 | Oco05G022850, Oco06G023690 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G090500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0107051, Pt_Chr0107586, Pt_Chr0405319 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005940, Chr04G028050, Chr07G026940, Chr12G031400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G107800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039140, gene_TRIDC4BG010150 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G249300.1, TraesCS4B02G065400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb056350_P001, Zm00001eb215430_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14993, nbis-gene-16063 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2857, Zma_g535 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.642, evm.TU.LG12.1012 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g27930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.830, evm.TU.Scaffold_8_RagTag.897 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14464 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.270 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003619 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11454 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17112 |
| Salicaceae | Populus euphratica | 1 | populus_peu32069 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604057, gene-LOC132627762 |
| Solanaceae | Solanum chilense | 2 | SOLCI005143000, SOLCI007094300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007250, gene-LOC107018225 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1783 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2685 |
| Zosteraceae | Zostera marina | 2 | Zosma04g07330.v3.1, Zosma05g29090.v3.1 |