Basic Information
Locus ID:
nbisL1-mrna-11432
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Classical arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 12158416 | 12158841 | + | nbisL1-mrna-11432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 14,428.39 Da | 69.33 | 87.31 | 0.42 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47930.1 | arabinogalactan protein 26. | 0 |
| RefSeq | XP_021613289.1 | - | 0 |
| Q94F57 | Classical arabinogalactan protein 26 OS=Arabidopsis thaliana OX=3702 GN=AGP26 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2C9VVE4 | Classical arabinogalactan protein 26-like OS=Manihot esculenta OX=3983 GN=MANES_05G068100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11216, jg27980, jg5695 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000006214 |
| Apiaceae | Apium graveolens | 1 | Ag11G03092 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711748 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA17387 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G47930.1, AT5G18690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001715m.g.v1.0, Thhalv10015003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g29850.v2.2, Sp6g25650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044030.2N, BniS05187g200.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1617, Ceq09G1221 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1678 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g01290, gene.Cymno03g13190, gene.Cymno05g04940 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g12170, gene.Thate06g23030 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.269 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008202, Pov_00022483 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.4461, BH02.4510 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0096010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0316640.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g71170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G398300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600755 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G001400, Chr05G033150, Chr05G033260, Chr08G018490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G760100 |
| Poaceae | Triticum aestivum | 1 | TraesCS3D02G470000.1.cds1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28201 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11905, Zma_g11906, Zma_g9350 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.774, evm.TU.LG04.2182, evm.TU.LG06.124 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g32300 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.533 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11432 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7734 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11533, nbisL1-mrna-538 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7529 |
| Salicaceae | Populus euphratica | 1 | populus_peu31202 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132608389, gene-LOC132627514, gene-LOC132644127 |
| Solanaceae | Solanum chilense | 3 | SOLCI002256400, SOLCI003725200, SOLCI004831400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029508 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.815_chr01_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0241, TC12G1555 |
| Zosteraceae | Zostera marina | 1 | Zosma02g25520.v3.1 |